Project supplied SAM CIGAR operations onto reference/query intervals, clipping a...

{ "body": { "artifact": { "samCigar": { "claim": null, "data": { "cigar": "1H2S3M2I1D2N2=1X1S2H", "pos": 100, "query_positions": [ 0, 2, 4, 9, 10 ], "reverse": false } } } }, "bodyType": "json", "method": "POST", "type": "http" }

{ "example": { "billable": true, "findings": [ { "confidence": 1, "evidence": [ { "page_indices": [], "page_url": null, "pattern": "sam16-cigar-query-reference-clipping-coordinate-projection_scoped_evidence", "type": "artifact" } ], "limits": [ "Complete caller-supplied anonymous technical artifact; published bounded rules; no external lookup or physical/clinical/security certification." ], "module": "sam16-cigar-query-reference-clipping-coordinate-projection", "state": "observed", "value": { "claim_matches": false, "computed": { "projections": [ { "category": "soft_clip", "original_query_index": 0, "reference_position": null, "stored_query_index": 0 }, { "category": "aligned", "original_query_index": 2, "reference_position": 100, "stored_query_index": 2 }, { "category": "aligned", "original_query_index": 4, "reference_position": 102, "stored_query_index": 4 }, { "category": "aligned", "original_query_index": 9, "reference_position": 108, "stored_query_index": 9 }, { "category": "soft_clip", "original_query_index": 10, "reference_position": null, "stored_query_index": 10 } ], "query_length": 11, "reference_end_exclusive": 109, "reference_start": 100, "spans": [ { "length": 1, "operation": "H", "query_end": 0, "query_start": 0, "reference_end": 100, "reference_start": 100 }, { "length": 2, "operation": "S", "query_end": 2, "query_start": 0, "reference_end": 100, "reference_start": 100 }, { "length": 3, "operation": "M", "query_end": 5, "query_start": 2, "reference_end": 103, "reference_start": 100 }, { "length": 2, "operation": "I", "query_end": 7, "query_start": 5, "reference_end": 103, "reference_start": 103 }, { "length": 1, "operation": "D", "query_end": 7, "query_start": 7, "reference_end": 104, "reference_start": 103 }, { "length": 2, "operation": "N", "query_end": 7, "query_start": 7, "reference_end": 106, "reference_start": 104 }, { "length": 2, "operation": "=", "query_end": 9, "query_start": 7, "reference_end": 108, "reference_start": 106 }, { "length": 1, "operation": "X", "query_end": 10, "query_start": 9, "reference_end": 109, "reference_start": 108 }, { "length": 1, "operation": "S", "query_end": 11, "query_start": 10, "reference_end": 109, "reference_start": 109 }, { "length": 2, "operation": "H", "query_end": 11, "query_start": 11, "reference_end": 109, "reference_start": 109 } ] } }, "warnings": [] } ], "known_count": 1, "scope": { "contact_values_returned": false, "network": false, "supplied_artifact_only": true }, "warnings": [] }, "type": "json" }